Relevant C++-core classes¶
C++ core of TemporAl COntact Modeling and Analysis. Provides fast tools to analyze temporal contact networks and simulate Gillespie processes on them.
Temporal network classes¶
edge_lists |
Description of a temporal network by listing the edges of the networks at a certain time. |
edge_changes |
Description of a temporal network by listing the changes of edges at a certain time. |
edge_trajectories |
Instead of getting lists of edges ordered in time, this description of a temporal network consists of a list of _tacoma.edge_trajectory_entry . |
Compartmental infection models¶
SI |
Base class for the simulation of an SI compartmental infection model on a temporal network. |
SIS |
Base class for the simulation of an SIS compartmental infection model on a temporal network. |
SIR |
Base class for the simulation of an SIR compartmental infection model on a temporal network. |
SR |
Base class for the simulation of an SR compartmental infection model on a temporal network (an SIR model where only initially infected have non-zero infection rate and non-zero recovery rate. |
SIRS |
Base class for the simulation of an SIRS compartmental infection model on a temporal network. |
node_based_SIS |
Base class for the simulation of an SIS compartmental infection model on a temporal network using an SI-Graph for keeping track of SI-edges (meaning this is a node-based algorithm). |
eSIS |
Base class for the simulation of an \(\varepsilon\)-SIS compartmental infection model on a temporal network. |
QS_SIS |
Base class for the simulation of an quasi-stationary SIS compartmental infection model on a temporal network. |
coverage_SIS |
Base class for the simulation of an SIS compartmental infection model on a temporal network. |
cluster_size_SIS |
Base class for the simulation of an SIS compartmental infection model on a temporal network. |
Markov integraion models¶
MARKOV_SIS |
Base class for the markov integration of an SIS compartmental infection model on a temporal network. |
Temporal network model classes¶
EdgeActivityModel |
Base class for the simulation of a simple edge activity model. |
FlockworkPModel |
Base class for the simulation of a simple Flockwork-P model. |
Analysis classes¶
edge_lists_with_histograms |
Similar to the _tacoma.edge_lists class but with additional analysis results. |
edge_changes_with_histograms |
Similar to the _tacoma.edge_changes class but with additional analysis results. |
group_sizes_and_durations |
Helper classes¶
edge_trajectory_entry |
This is an entry of an edge-based notation of a temporal network. |
social_trajectory_entry |
Each _tacoma.social_trajectory_entry |
edge_weight |
Helper class for internal usage. |
EPI |