Temporal contact modeling and analysis

• About this project

Temporal networks

• Temporal network classes
  • Edge lists
  • Edge changes
  • Edge trajectories
  • List of adjacency matrices
  • Which class to use
• Verification and conversion
  • Verification
  • Conversion
• Manipulating temporal networks
  • Slicing
  • Concatenating
  • Rescaling time
• Binning and sampling
  • Binning
  • Sampling
  • Applications
• Read, write and share
  • The status quo — csv
  • A new format — The taco
  • Edge coordinate files
  • Loading existing data
• A construction example

Visualizations

• Drawing
  • Edge activity plots
• Interactive
  • Start visualization
  • Export visualization

Structural and temporal analysis

• Edge counts and degree
  • Average degree distribution
  • Mean degree
  • Edge counts
  • Contact coverage
• Group sizes, durations and aggreation
  • Base analysis function
  • Group sizes
  • Durations
  • Aggregated network
• Social trajectories
  • Binned
  • Continuous time

Epidemic Spreading

• Dynamic Gillespie SSA
  • How it works
  • How it’s implemented
  • How to develop an own model
• Epidemic classes
  • SI
  • SIS
  • SIR
  • SIRS
  • \(\varepsilon\)-SIS
  • coverage-SIS
• Dynamic Markov integration
  • How it works
  • How it’s implemented
  • How to integrate for an SIS-Model
  • How to develop an own model
• Epidemics on models

Modeling

• Flockworks
• Edge activity model
• Dynamic RGGs
• ZSSB model

Reference

• Relevant C++-core classes
  • Temporal network classes
  • Compartmental infection models
  • Markov integraion models
  • Temporal network model classes
  • Analysis classes
  • Helper classes
• API module
• Analysis module
• Tools module
• Drawing module
• Interactive module
• Data I/O module
• Additional network formats
• Epidemics module
• Models conversion module
• Flockwork module
• Loading model parameters module